SHORTY
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Application data |
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| Created by | Steven Skiena |
|---|---|
| Biological application domain(s) | Sequence assembly (de novo assembly) |
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | ABI SOLiD |
| Created at | Stony Brook University |
| Maintained? | No |
| Programming language(s) | C++, Perl |
Summary: SHORTY is targetted for de novo assembly of microreads with mate pair information and sequencing errors. SHORTY has some novel approach and features in addressing the short read assembly problem..
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Description
SHORTY is going through constant development and improvement. Though it is meant to work for any platform of short read sequencing, currently we are more focused on ABI's SOLiD type data. This release is more ABI friendly.
Comparison with Velvet can be downloaded from here.
Links
References
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