Difference between revisions of "Sequencher"
| Line 3: | Line 3: | ||
|bio domain=De-novo assembly, SNP discovery | |bio domain=De-novo assembly, SNP discovery | ||
|bio method=Assembly, Alignment | |bio method=Assembly, Alignment | ||
| − | |bio tech=454, Illumina, SOLiD, Ion Torrent, Sanger | + | |bio tech=454, Illumina, ABI SOLiD, Ion Torrent, Sanger |
|created by=Genecodes | |created by=Genecodes | ||
|maintained=Yes | |maintained=Yes | ||
| − | |input format=FASTQ, FASTA, | + | |input format=FASTQ, FASTA, |
|output format=proprietary | |output format=proprietary | ||
|sw feature=Bisulfite sequencing, consensus sequence generation and export, SNP/InDel/Read Error display and search | |sw feature=Bisulfite sequencing, consensus sequence generation and export, SNP/InDel/Read Error display and search | ||
Revision as of 02:49, 5 January 2012
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Application data |
|
| Created by | Genecodes |
|---|---|
| Biological application domain(s) | De-novo assembly, SNP discovery |
| Principal bioinformatics method(s) | Assembly, Alignment |
| Technology | 454, Illumina, ABI SOLiD, Ion Torrent, Sanger |
| Maintained? | Yes |
| Input format(s) | FASTQ, FASTA |
| Output format(s) | proprietary |
| Software features | Bisulfite sequencing, consensus sequence generation and export, SNP/InDel/Read Error display and search |
| Licence | Commercial |
| Operating system(s) | Windows, Mac OS X |
Summary: Desktop alignment software now with plugins to MAQ and GSNAP for NGS sequence date
"Error: no local variable "counter" was set." is not a number.
Description
Sequencher 5.0 has been updated to deal with NGS data. It now uses Tablet, MAQ, and GSNAP as plugins to deal with NGS data. Requires cygwin libraries on Windows in order to run plugins.
Links
References
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