Sequencher

Application data
Created by	Genecodes
Biological application domain(s)	Sequence assembly (de novo assembly), SNP detection
Principal bioinformatics method(s)	Sequence assembly, Sequence alignment
Technology	454, Illumina, ABI SOLiD, Ion Torrent, Sanger
Maintained?	Yes
Input format(s)	FASTQ, FASTA
Output format(s)	proprietary
Software features	Bisulfite sequencing, consensus sequence generation and export, SNP/InDel/Read Error display and search
Licence	Commercial
Operating system(s)	Windows, Mac OS X

Summary: Desktop alignment software now with plugins to MAQ and GSNAP for NGS sequence date

"Error: no local variable "counter" was set." is not a number.

Description

Sequencher 5.0 has been updated to deal with NGS data. It now uses Tablet, MAQ, and GSNAP as plugins to deal with NGS data. Requires cygwin libraries on Windows in order to run plugins.

Links

• Sequencher Homepage [ edit link ]

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References

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