Difference between revisions of "PeakRanger"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A multi-purpose, ultrafast ChIP Seq peak caller | |sw summary=A multi-purpose, ultrafast ChIP Seq peak caller | ||
| − | |bio domain=ChIP-Seq, | + | |bio domain=ChIP-Seq, |
|bio method=Peak calling | |bio method=Peak calling | ||
|created by=Xin Feng | |created by=Xin Feng | ||
| Line 8: | Line 8: | ||
|output format=BED | |output format=BED | ||
|language=C++ | |language=C++ | ||
| − | |licence=Artistic License, | + | |licence=Artistic License, |
| − | |os=Linux, | + | |os=Linux, Mac OS X, |
}} | }} | ||
== Description == | == Description == | ||
Revision as of 11:25, 22 April 2012
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Application data |
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| Created by | Xin Feng |
|---|---|
| Biological application domain(s) | ChIP-Seq |
| Principal bioinformatics method(s) | Peak calling |
| Maintained? | Yes |
| Input format(s) | SAM/BAM, Bowtie, BED |
| Output format(s) | BED |
| Programming language(s) | C++ |
| Licence | Artistic License |
| Operating system(s) | Linux, Mac OS X |
Summary: A multi-purpose, ultrafast ChIP Seq peak caller
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Description
PeakRanger detects enriched regions from ChIP-Seq experiments and also detect summits within these regions. The software is faster than most existing peak callers while consuming less memories.
Links
References
To add a reference for PeakRanger, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "PeakRanger" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
