Difference between revisions of "Flexbar"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary= | + | |sw summary=flexible barcode and adapter processing for next-generation sequencing platforms |
|bio domain=Next Generation Sequencing | |bio domain=Next Generation Sequencing | ||
|bio method=Trimming, Read pre-processing | |bio method=Trimming, Read pre-processing | ||
Revision as of 16:05, 6 December 2012
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Application data |
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| Biological application domain(s) | Next Generation Sequencing |
|---|---|
| Principal bioinformatics method(s) | Trimming, Read pre-processing |
| Technology | Illumina, 454, SOLiD |
| Maintained? | Yes |
| Input format(s) | Fasta/q, Csfasta/q |
| Output format(s) | Fasta/q, Csfasta/q |
| Software features | Paired read support |
| Programming language(s) | C++ |
| Software libraries | SeqAn, TBB |
| Licence | GPLv3 |
| Operating system(s) | Linux 64, Mac OS X, Windows |
Summary: flexible barcode and adapter processing for next-generation sequencing platforms
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Description
Flexbar - flexible barcode detection and adapter removal, former name FAR, is a program to preprocess sequencing data. It demultiplexes barcoded runs and removes adapter sequences. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, or SOLiD platform.
Links
- Flexbar Homepage [ edit link ]
- Flexbar Manual [ edit link ]
- Flexbar Publication full text [ edit link ]
References
To add a reference for Flexbar, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "Flexbar" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
