Difference between revisions of "SeqMonk"
Simonandrews (talk | contribs) (Updated the list of input/output formats) |
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|created by=Simon Andrews | |created by=Simon Andrews | ||
|created at=The Babraham Institute | |created at=The Babraham Institute | ||
| − | |input format=Eland, GFF, BED, Maq, Bowtie, Delimited Text | + | |input format=Eland, GFF, BED, Maq, Bowtie, SAM, Delimited Text |
| + | |output format=PNG, SVG, Delimited Text | ||
|sw feature=Genome Viewer, Data Visualisation, Data Quantitation filtering and analysis | |sw feature=Genome Viewer, Data Visualisation, Data Quantitation filtering and analysis | ||
|language=Java | |language=Java | ||
Revision as of 17:41, 1 October 2009
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Application data |
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| Created by | Simon Andrews |
|---|---|
| Biological application domain(s) | Genomics, Epigenomics |
| Principal bioinformatics method(s) | Assembly visualization |
| Created at | The Babraham Institute |
| Maintained? | Maybe |
| Input format(s) | Eland, GFF, BED, Maq, Bowtie, SAM, Delimited Text |
| Output format(s) | PNG, SVG, Delimited Text |
| Software features | Genome Viewer, Data Visualisation, Data Quantitation filtering and analysis |
| Programming language(s) | Java |
| Licence | GPLv3 |
| Operating system(s) | Windows, OSX, Linux |
Summary: A tool to visualise and analyse high throughput mapped sequence data
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SeqMonk is designed to be an easy to use application for the analysis of large scale mapped sequence datasets. It allows you to visualise your mapped datasets against an annotated genome with very flexible visualisation options.
In addition you can also quantitate your data in a number of different ways, and then filter these results to pull out regions of interest. Finally you can annotate regions of interest and export reports and figures for further analysis.
SeqMonk can be used to analyse a wide range of data types, ChIP-Seq, Genome Reseqencing, 3/4C, MeDIP, Bisulphite Seq etc.
