User contributions
5 January 2012
TAPyR
no edit summary
-31
SeqSolve
no edit summary
+2
Genome Trax
no edit summary
-3
SHOREmap
no edit summary
+2
Shore
no edit summary
+3
Sequencher
no edit summary
+3
PerM
no edit summary
-3
Nexalign
no edit summary
-2
MIP Scaffolder
no edit summary
-3
Golden Helix
no edit summary
+4
SHORTY
no edit summary
+1
GenomeJack
no edit summary
+4
Avadis NGS
no edit summary
-8
SeqSolve
no edit summary
-45
5 November 2011
3 November 2011
23 September 2011
21447171
Created page with "{{Reference |reference describes=DecGPU |pmid=21447171 |title=DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI. |year=2011 ..."
DecGPU
Created page with "{{Bioinformatics application |sw summary=Parallel and distributed error correction algorithm for high-throughput short reads. |bio domain=De-novo assembly, |bio method=Error cor..."
MUMmerGPU
no edit summary
+4
15 September 2011
PRICE/URL 0
Created page with "{{URL |url describes=PRICE |type=Homepage |url=http://derisilab.ucsf.edu/software/price/index.html }}"
PRICE
Created page with "{{Bioinformatics application |sw summary=PRICE uses paired-read information to iteratively increase the size of existing contigs. |bio method=Assembly, |language=C++ }} == Descr..."
14 September 2011
21646344
Created page with "{{Reference |reference describes=BEADS |pmid=21646344 |title=Systematic bias in high-throughput sequencing data and its correction by BEADS. |year=2011 |journal=Nucleic Acids Res..."
BEADS
Created page with "{{Bioinformatics application |sw summary=ChIP-Seq data normalization for Illumina |bio domain=ChIP-Seq, |bio method=Normalization |bio tech=Illumina }} == Description == <!-- D..."
21653520
Created page with "{{Reference |reference describes=PiCall |pmid=21653520 |title=A probabilistic method for the detection and genotyping of small indels from population-scale sequence data. |year=2..."
PiCall/URL 0
Created page with "{{URL |url describes=PiCall |type=Homepage |url=http://polymorphism.scripps.edu/~vbansal/software/piCALL/ }}"
PiCall
Created page with "{{Bioinformatics application |sw summary=Identifies short indel polymorphisms in population sequencing data |bio domain=InDel discovery, Population genetics, }} == Description =..."
21659319
Created page with "{{Reference |reference describes=MapDamage |pmid=21659319 |title=mapDamage: testing for damage patterns in ancient DNA sequences. |year=2011 |journal=Bioinformatics |author=Ginol..."
MapDamage/URL 0
Created page with "{{URL |url describes=MapDamage |type=Source code |url=http://geogenetics.ku.dk/all_literature/mapdamage/ }}"
MapDamage
no edit summary
+37
MapDamage
Created page with "{{Bioinformatics application |sw summary=Identifies DNA damage patterns in ancient DNA |bio domain=Ancient DNA }} == Description == <!-- Describe the application in the space be..."
21689413
Created page with "{{Reference |reference describes=Sniper |pmid=21689413 |title=Sniper: improved SNP discovery by multiply mapping deep sequenced reads. |year=2011 |journal=Genome Biology |author..."
Sniper/URL 0
Created page with "{{URL |url describes=Sniper |type=Homepage |url=http://kim.bio.upenn.edu/software/sniper.shtml }}"
Sniper
Created page with "{{Bioinformatics application |sw summary=SNP discovery utilizing multi-mapping reads |bio domain=SNP discovery, }} == Description == <!-- Describe the application in the space ..."
21645377
Created page with "{{Reference |reference describes=CloudAligner |pmid=21645377 |title=CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping. |year=2011 |journal=BMC Res ..."
CloudAligner/URL 1
Created page with "{{URL |url describes=CloudAligner |type=Analysis server |url=http://mine.cs.wayne.edu:8080/CloudAligner/ }}"
CloudAligner/URL 0
Created page with "{{URL |url describes=CloudAligner |type=Source code |url=http://cloudaligner.sourceforge.net/ }}"
CloudAligner
Created page with "{{Bioinformatics application |sw summary=Hadoop-based short read aligner |bio method=Mapping, Hadoop }} == Description == <!-- Describe the application in the space below --> ..."
21697132
Created page with "{{Reference |reference describes=SEAL |pmid=21697132 |title=SEAL: a distributed short read mapping and duplicate removal tool. |year=2011 |journal=Bioinformatics |author=Pireddu ..."
SEAL/URL 0
Created page with "{{URL |url describes=SEAL |type=Source code |url=http://biodoop-seal.sourceforge.net/ }}"
SEAL
Created page with "{{Bioinformatics application |sw summary=Read mapper and duplicate remover. |bio method=Mapping, Hadoop, }} == Description == <!-- Describe the application in the space below -..."
21828086
Created page with "{{Reference |reference describes=ExomeCNV |pmid=21828086 |title=Exome Sequencing-Based Copy-Number Variation and Loss of Heterozygosity Detection: ExomeCNV |year=2011 |journal=B..."
ExomeCNV
Description
+83
ExomeCNV
no edit summary
+11
ExomeCNV
Created page with "{{Bioinformatics application |sw summary=Identifies copy number variation from targeted exome sequencing data |bio domain=Targeted resequencing, Copy number estimation, }} == De..."
Spiral Genetics
no edit summary
21851591
Created page with "{{Reference |reference describes=PARalyzer |pmid=21851591 |title=PARalyzer: Definition of RNA binding sites from PAR-CLIP short-read sequence data. |year=2011 |journal=Genome Bio..."
PARalyzer/URL 0
Created page with "{{URL |url describes=PARalyzer |type=Homepage |url=http://www.genome.duke.edu/labs/ohler/research/PARalyzer/ }}"
PARalyzer
Created page with "{{Bioinformatics application |sw summary=Tool to analyze cross-linking and immunoprecipitation data (CLIP) }} == Description == <!-- Describe the application in the space below ..."
21840877
Created page with "{{Reference |reference describes=ChimeraScan |pmid=21840877 |title=ChimeraScan: A tool for identifying chimeric transcription in sequencing data |year=2011 |journal=Bioinformatic..."
ChimeraScan/URL 0
Created page with "{{URL |url describes=ChimeraScan |type=Source code |url=http://chimerascan.googlecode.com }}"