Phred Phrap Consed Cross match
Revision as of 05:23, 25 August 2015 by LuisPedroCoelho (talk | contribs) (Text replace - "Basecaller" to "Base-calling")
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Application data |
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| Principal bioinformatics method(s) | Alignment, Sequence assembly, Base-calling, Smith-Waterman |
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| Technology | Sanger |
| Maintained? | Yes |
| Input format(s) | AB1 |
| Output format(s) | FASTA |
Summary: The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing, editing, and finishing sequence assemblies created with phrap.
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See Phred, Phrap, Cross match and Consed.
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