Ray
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Application data |
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| Created by | Sébastien Boisvert, François Laviolette & Jacques Corbeil. |
|---|---|
| Biological application domain(s) | Sequence assembly (de novo assembly) |
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | Illumina, 454 |
| Created at | Université Laval, Québec, Canada |
| Maintained? | Yes |
| Input format(s) | paired, paired interleaved, single reads: .fasta .fasta.gz .fasta.bz2 .fastq .fastq.gz .fastq.bz2 .sff |
| Output format(s) | .fasta, .txt |
| Software features | MPI 2.2, de Bruijn graphs, parallel, Illumina data |
| Programming language(s) | C++ |
| Licence | GPL |
| Operating system(s) | Linux, POSIX |
Summary: de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.
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Parallel de novo genome assemblies of next-gen sequencing data
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