MAQ

Application data
Created by	Heng Li
Biological application domain(s)	Genomics, SNP discovery
Principal bioinformatics method(s)	Mapping
Created at	The Wellcome Trust Sanger Institute
Maintained?	Maybe
Input format(s)	FASTA, FASTQ
Output format(s)	MAQ
Programming language(s)	C++, Perl
Licence	GPL

Summary: Mapping and Assembly with Qualities (renamed from MAPASS2). Particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data. Written by Heng Li from the Sanger Centre.

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Link: http://sourceforge.net/projects/maq/ Category: Alignment & Mapping