CLCbio Genomics Workbench
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Application data |
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| Created by | Knudsen T, Knudsen B |
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| Biological application domain(s) | Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq Alignment, miRNA |
| Principal bioinformatics method(s) | Mapping, Assembly, Alignment, Colorspace |
| Technology | 454, Illumina, ABI SOLiD, Helicos, Sanger |
| Created at | http://www.clcbio.com |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus |
| Software features | Advanced and user-friendly analyses of genomic, transcriptomic, and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution |
| Programming language(s) | Java, C++ |
| Licence | Perpetual, temporal, floating network and terminal server licenses available. Free, limited time trial and evaluation licenses. |
| Operating system(s) | Windows, Mac OS X, Linux |
Summary: De novo and reference assembly SNP and small indel detection and annotation.
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Server/enterprise options for scalability of computation and storage.
Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.
Links
References
- . 2009. PNAS
- . 2009. J. Virol.
- . 2009. Mol Plant Microbe Interact.
- . 2010. PNAS
- . 2010. Nucleic Acids Research
- . 2010. Cell Metabolism
To add a reference for CLCbio Genomics Workbench, enter the PubMed ID in the field below and click 'Add'.
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