21810901
This reference describes Mauve.
| PMID | PMID 21810901 |
|---|---|
| Title | Mauve Assembly Metrics. |
| Year | 2011 |
| Journal | Bioinformatics |
| Author | Darling A, Tritt A, Eisen JA, Facciotti MT. |
| Volume | |
| Start page |
Error: No contents found at URL http://www.ebi.ac.uk/europepmc/webservices/rest/MED/21810901/citations/4000.
According to Europe PubMed Central, this reference has Error: no local variable "citations" was set. " Error: no local variable "citations" was set. " is not a number. citations.
For reference, you can check Google Scholar, which lacks an API because Google ...
Error: Invalid JSON. According to Almetric, this reference has an Altmetric score of Error: no local variable "altscore" was set. " Error: no local variable "altscore" was set. " is not a number..
Full text description
SUMMARY: High throughput DNA sequencing technologies have spurred the development of numerous novel methods for genome assembly. With few exceptions, these algorithms are heuristic and require one or more parameters to be manually set by the user. One approach to parameter tuning involves assembling data from an organism with an available high quality reference genome, and measuring assembly accuracy using some metrics. We developed a system to measure assembly quality under several scoring metrics, and to compare assembly quality across a variety of assemblers, sequence data types, and parameter choices. When used in conjunction with training data such as a high quality reference genome and sequence reads from the same organism, our program can be used to manually identify an optimal sequencing and assembly strategy for de novo sequencing of related organisms.
AVAILABILITY: GPL source code and a usage tutorial is at http://ngopt.googlecode.com
