Mlgt
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Application data |
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| Created by | Dave T. Gerrard |
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| Biological application domain(s) | genotyping, Targeted resequencing, Resequencing |
| Principal bioinformatics method(s) | DNA sequence analysis, Error correction, Filtering, Sample Barcoding, Pooled samples, Read Alignment, Sequence analysis |
| Technology | 454, pacific biosciences, Illumina?, Ion Torrent? |
| Created at | University of Manchester |
| Maintained? | Yes |
| Input format(s) | FASTA |
| Output format(s) | Tab-delimited file, RData, PDF |
| Software features | Sequence assignment, sequence alignment, allignment error correction, variant counting, genotype calling, allele-matching |
| Programming language(s) | R |
| Software libraries | BLAST, MUSCLE |
| Licence | GPL >=2 |
| Operating system(s) | Windows, UNIX, Mac OS X |
Summary: Processing and analysis of high throughput, long-read (e.g. Roche 454) sequences generated from multiple loci and multiple biological samples. Sequences are assigned to their locus and sample of origin, aligned and trimmed. Where possible, genotypes are called and variants mapped to known alleles.
"Error: no local variable "counter" was set." is not a number.
Description
R package on CRAN http://cran.r-project.org/web/packages/mlgt/index.html
User README guide within package and here:- http://personalpages.manchester.ac.uk/staff/David.Gerrard/mlgtREADME.pdf
Links
none specified
References
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