Flexbar
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Application data |
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| Biological application domain(s) | Next Generation Sequencing, Sequence Quality Control, Genomics |
|---|---|
| Principal bioinformatics method(s) | Read pre-processing, Sample Barcoding, Adapter Removal, Trimming |
| Technology | Illumina, 454, SOLiD |
| Created at | Sourceforge |
| Maintained? | Yes |
| Input format(s) | Fasta/q, Csfasta/q |
| Output format(s) | Fasta/q, Csfasta/q |
| Software features | Paired read support, separate barcode reads, multi-threading |
| Programming language(s) | C++ |
| Software libraries | SeqAn, TBB |
| Licence | GPLv3 |
| Operating system(s) | Linux, Windows, Mac OS X |
Summary: flexible barcode and adapter processing for next-generation sequencing platforms
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Description
Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. Next-generation sequencing data from Illumina, Roche 454, and the SOLiD platform is supported.
Links
- Flexbar Homepage [ edit link ]
- Flexbar Manual [ edit link ]
- Flexbar Publication full text [ edit link ]
References
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