SEECER

Application data
Created by	Le H, Schulz MH, Bar-Joseph Z
Biological application domain(s)	RNA Seq analysis
Technology	Illumina, 454, Ion Torrent, PacBio
Created at	Carnegie Mellon University
Maintained?	Yes
Input format(s)	FASTA, FASTQ
Output format(s)	Fasta
Software features	supports multicore processors
Programming language(s)	C

Summary: Error correction for RNA-Seq data

"Error: no local variable "counter" was set." is not a number.

SEECER is an error correction method that removes errors that are introduced during sequencing. Mismatches, insertion or deletions are removed by creating multiple alignments of reads and building HMMs that are used to decide which reads are be corrected. In the provided reference it is shown that error correction with SEECER improves the downstream analysis, especially RNA de novo assembly.

Links

• SEECER Homepage [ edit link ]
• SEECER Mailing list [ edit link ]
• SEECER Mailing list [ edit link ]

• Add a Link

References

1. . 2013. Nucleic Acids Res.

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