20031974
This reference describes BRAT.
| PMID | PMID 20031974 |
|---|---|
| Title | BRAT: Bisulfite-treated Reads Analysis Tool. |
| Year | 2009 |
| Journal | Bioinformatics |
| Author | Harris EY, Ponts N, Levchuk A, Le Roch K, Lonardi S. |
| Volume | |
| Start page |
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Full text description
SUMMARY: We present a new, accurate and efficient tool for mapping short reads obtained from the Illumina Genome Analyzer following sodium bisulfite conversion. Our tool, BRAT, supports single and paired-end reads and handles input files containing reads and mates of different lengths. BRAT is faster, maps more unique paired-end reads and has higher accuracy than existing programs. The software package includes tools to end-trim low quality bases of the reads and to report nucleotide counts for mapped reads on the reference genome. AVAILABILITY: The source code is freely available for download at http://compbio.cs.ucr.edu/brat/ and is distributed as Open Source soft-ware under the GPLv3.0. CONTACT: elenah@cs.ucr.edu.
