22388286
This reference describes Bowtie.
| PMID | PMID 22388286 |
|---|---|
| Title | Fast gapped-read alignment with Bowtie 2 |
| Year | 2012 |
| Journal | Nature Methods |
| Author | Benjamin Langmead, Steven L. Salzberg |
| Volume | 9 |
| Start page | 357 |
Error: No contents found at URL http://www.ebi.ac.uk/europepmc/webservices/rest/MED/22388286/citations/4000.
According to Europe PubMed Central, this reference has Error: no local variable "citations" was set. " Error: no local variable "citations" was set. " is not a number. citations.
For reference, you can check Google Scholar, which lacks an API because Google ...
Error: Invalid JSON. According to Almetric, this reference has an Altmetric score of Error: no local variable "altscore" was set. " Error: no local variable "altscore" was set. " is not a number..
Full text description
As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
