CATCH

Application data
Created by	Nielsen FG
Biological application domain(s)	ChIP-seq, ChIP-on-chip
Principal bioinformatics method(s)	Clustering, Sequence alignment
Created at	CMBI, Nijmegen Centre for Molecular Life Sciences
Maintained?	Yes
Input format(s)	BED, WIG
Output format(s)	BED, CSV
Software features	parallel execution, graphical browsing of results
Programming language(s)	Java
Licence	Open Source

Summary: A tool for exploring patterns in ChIP profiling data.

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CATCHprofiles is an tool for exploring patterns in ChIP profiling data. The CATCH algorithm performs a hierachical clustering of the profile patterns with an exhaustive alignment at each step. The algorithm has a user-friendly graphical interface that makes it easy for you to browse your results.

Links

• CATCH Homepage [ edit link ]

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