EULER
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Application data |
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| Principal bioinformatics method(s) | Sequence assembly, Sequence assembly (de-novo assembly) |
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| Created at | University of California San Diego |
| Maintained? | Maybe |
| Programming language(s) | C++, Perl |
| Operating system(s) | Linux |
Summary: EULER-SR is a program for de novo assembly of reads. Contrary to the overlap-layout approach, EULER-SR uses a de Bruijn graph to construct an assembly. The assembly of a genome corresponds to an Eulerian path in the de Bruijn graph. Long (possibly erroneous) reads, and mate-pairs are used to determine parts of the correct Eulerian traversal in the assembly.
"Error: no local variable "counter" was set." is not a number.
The Euler software tools were one of the first ones to use de-Bruijn graphs for next generation assembly.
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