GASSST
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Application data |
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| Created by | Guillaume Rizk and Dominique Lavenier |
|---|---|
| Principal bioinformatics method(s) | Sequence alignment, Mapping |
| Created at | IRISA-Symbiose |
| Maintained? | Yes |
| Input format(s) | FASTA |
| Output format(s) | SAM |
| Software features | Gapped alignment, short and long reads |
| Programming language(s) | C++ |
| Licence | CeCILL |
| Operating system(s) | Linux |
Summary: Fast and accurate aligner for short an long reads
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Description
GASSST is a read mapper with two main objectives:
- efficient on short 36 bp reads as well as on longer 500bp reads
- still efficient with a high error rate and indels.
It uses the traditional "seed and extend" paradigm with a new filtering step to quickly discards most candidate alignment locations.
Links
References
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