Girafe
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Application data |
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| Created by | Joern Toedling, Wolfgang Huber |
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| Principal bioinformatics method(s) | Sequence alignment |
| Maintained? | Maybe |
| Programming language(s) | R |
Summary: The R/Bioconductor package girafe facilitates the functional exploration of alignments of sequence reads from next-generation sequencing data to a genome. It allows users to investigate the genomic intervals together with the aligned reads and to work with, visualise and export these intervals.
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Description
The package 'girafe' deals with the genome-level representation of aligned reads from next-generation sequencing data. It contains an object class for enabling a detailed description of genome intervals with aligned reads and functions for comparing, visualising, exporting and working with such intervals and the aligned reads. As such, the package interacts with and provides a link between the R packages ShortRead, IRanges and genomeIntervals.
Links
References
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