ISSAKE
|
Application data |
|
| Created by | Rene Warren |
|---|---|
| Biological application domain(s) | Metagenomics |
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | Illumina |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | No |
| Programming language(s) | Perl, Python |
| Licence | GPLv2 |
Summary: Short Sequence Assembly by K-mer search and 3' read Extension, Immunology version (iSSAKE)
"Error: no local variable "counter" was set." is not a number.
SSAKE is a genomics application for de novo assembly of millions of very short DNA sequences.
It is an easy-to-use, robust, reliable and tractable clustering algorithm for very short sequence reads, such as those generated by Illumina.
Links
References
To add a reference for ISSAKE, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "ISSAKE" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
