Kissnp
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Application data |
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| Created by | Peterlongo P |
|---|---|
| Biological application domain(s) | Comparative genomics, Transcriptomics, SNP detection, Indel detection |
| Principal bioinformatics method(s) | Sequence assembly, Sequence assembly (de-novo assembly), Data retrieval |
| Technology | Illumina, 454 |
| Created at | INRIA Rennes - Bretagne Atlantique Symbiose team, IRISA-Symbiose |
| Maintained? | Yes |
| Input format(s) | FASTA |
| Output format(s) | FASTA |
| Software features | SNP calling |
| Programming language(s) | C |
| Licence | CeCILL |
| Operating system(s) | Linux |
Summary: kisSnp compares two sets of NGS raw reads, detecting Single Nucleotide Polymorphism occurring between the two sets. The two sets typically come from the sequencing of two individuals from the same species or from closely related species.
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Description
kisSnp compares two sets of NGS raw reads, detecting Single Nucleotide Polymorphism occurring between the two sets.
The two sets typically come from the sequencing of two individuals from the same species or from closely related species.
Links
References
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