Meraculous

Application data
Principal bioinformatics method(s)	Sequence assembly
Maintained?	Maybe
Input format(s)	specialized format
Output format(s)	fasta
Software features	De novo assembly, scaffolding
Programming language(s)	Perl, C
Software libraries	boost

Summary: De novo genome assembler from short reads

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Description

A novel assembler and scaffolder that uses an efficient hashing strategy. When compared on Pichia or E.coli it performed very well when compared to other de-novo assemblers. It was tested up to Arabidopsis genome size (~120MB) with simulated reads.

Links

• Meraculous Source code [ edit link ]

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References

1. . 2011. PLoS One

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