Minia
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Application data |
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| Created by | Chikhi R, Rizk G |
|---|---|
| Biological application domain(s) | Sequence assembly (de novo assembly) |
| Principal bioinformatics method(s) | Sequence assembly |
| Technology | Illumina |
| Created at | IRISA-Symbiose |
| Maintained? | Yes |
| Input format(s) | (Compressed) FASTA, (Compressed) FASTQ |
| Output format(s) | FASTA |
| Software features | Memory efficient and fast |
| Programming language(s) | C++ |
| Licence | CeCILL |
| Operating system(s) | Linux, Mac OS X |
Summary: De novo assembly of human genomes on a desktop computer
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Description
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling Illumina reads of a human genome on a desktop computer in a day. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).
Note: the output of Minia is a set of contigs. To use paired-end information and get scaffolds, use an external scaffolder (i.e. SSPACE, Bambus 2, etc..)
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References
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