Ngs backbone
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Application data |
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| Created by | Blanca J, Ziarsolo P |
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| Biological application domain(s) | SNP detection, Genomics |
| Principal bioinformatics method(s) | Read mapping, Sequence assembly |
| Technology | Sanger, Illumina, 454 |
| Created at | COMAV at Universidad Politecnica de Valencia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | BAM, VCF, GFF |
| Licence | AGPL |
| Operating system(s) | UNIX |
Summary: ngs_backbone is a bioinformatic application created to work on sequence analysis by using NGS (Next Generation Sequencing) and sanger sequences. It is capable of cleaning reads, do de novo assembly or mapping against a reference and annotate SNPs, SSRs, ORFs, GO terms and sequence descriptions.
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ngs_backbone is a bioinformatic application created to work on sequence analysis by using NGS (Next Generation Sequencing) and sanger sequences. It is capable of cleaning reads, do de novo assembly or mapping against a reference and annotate SNPs, SSRs, ORFs, GO terms and sequence descriptions. Our laboratory is focused on transcriptomic analysis, so the tool has been used and tested on transcriptomes. Some analyses will be useful for genome analysis, but since our work deals mainly with transcriptomes design tradeoffs in ngs_backbone reflect this.
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