PALMapper
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Application data |
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| Principal bioinformatics method(s) | Read mapping |
|---|---|
| Created at | Friederich Miescher Laboratory of the Max Planck Society |
| Maintained? | Yes |
| Input format(s) | FASTQ |
| Output format(s) | BAM, SAM |
| Programming language(s) | C++ |
| Licence | GPLv3 |
Summary: Fast and Accurate Spliced Alignments of Sequence Reads.
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Contents
Description
The fusion of GenomeMapper and Qpalma, called PALMapper, is designed to accurately align RNA-seq reads against genomes.
Features
- Alignments with mismatches and indels.
- Accurate spliced alignments using computational splice site predictions, if available.
- Fast alignments (about 10 million reads/hour)
Links
References
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