Qpalma
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Application data |
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| Biological application domain(s) | RNA-Seq alignment |
|---|---|
| Principal bioinformatics method(s) | Sequence alignment |
| Technology | Illumina, 454 |
| Created at | Max Planck Society |
| Maintained? | Maybe |
| Output format(s) | PSL-like |
| Programming language(s) | Python, C++ |
Summary: QPalma is an alignment tool targeted to align spliced reads produced by Next Generation sequencing platforms
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QPalma aligns short reads to the genomic sequences in an optimal way according to its underlying algorithm and trained parameters. It creates an alignment using dynamic programming (written in C++), and returns the alignment in a psl like format. The algorithms computes optimal local alignments, so if no alignment has been found it is because no alignment got a sufficiently high alignment score.
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