PASH
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Application data |
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| Biological application domain(s) | Epigenomics, DNA methylation |
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| Principal bioinformatics method(s) | Sequence alignment, Bisulfite mapping |
| Maintained? | Maybe |
Summary: Pash 3.0 performs sequence comparison and read mapping and can be employed as a module within diverse configurable analysis pipelines, including ChIP-seq and methylome mapping by whole-genome bisulfite sequencing
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Description
Pash 3.0 makes use of gapped k-mer alignment, a non-seed based comparison method, which is implemented using multi-positional hash tables. This allows Pash 3.0 to run on diverse hardware platforms, including individual computers with standard RAM capacity, multi-core hardware architectures and large clusters.
Links
References
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| Web Search | Wiki Sites | Scientific |
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