RDiff
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Application data |
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| Created by | Drewe P |
|---|---|
| Biological application domain(s) | Alternative splicing, RNA-Seq, Transcriptomics |
| Principal bioinformatics method(s) | Sequence alignment, Differential expression analysis |
| Technology | Illumina HiSeq, Illumina Solexa, Illumina |
| Created at | Memorial Sloan-Kettering Cancer Center |
| Maintained? | Yes |
| Input format(s) | SAM, BAM, GFF3 |
| Output format(s) | Tab-delimited file |
| Programming language(s) | Python, Matlab |
| Licence | Open Source |
| Operating system(s) | Linux, Mac OS X |
Summary: rDiff is an open source tool for accurate detection of differential RNA processing from RNA-Seq data. It implements two statistical tests to detect changes of the RNA processing between two samples. rDiff.parametric is a powerful test, which can be applied for well annotated organisms to detect changes in the relative abundance of isoforms. rDiff.nonparametric is an alternative when the annotation is incomplete or missing.
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Links
- RDiff Homepage [ edit link ]
- RDiff Homepage [ edit link ]
- RDiff [ edit link ]
- RDiff Homepage [ edit link ]
References
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