RSEQtools
|
Application data |
|
| Created by | Lukas Habegger, Andrea Sboner |
|---|---|
| Biological application domain(s) | RNA-Seq quantification |
| Created at | Yale University |
| Maintained? | Yes |
| Input format(s) | Bowtie, PSL, SAM, Illumina export files |
| Output format(s) | MRF, SAM, BED, WIG, BEDGRAPH, GFF, etc. |
| Programming language(s) | C |
| Licence | Creative Commons - Attribution; Non-commercial 2.5 |
| Operating system(s) | Mac OS X, UNIX, Linux |
Summary:
RSEQtools includes a format specification for RNA-Seq data that provides confidentially-aware; data summaries as well as several tools for performing common analyses: expression measurements (e.g. RPKMs), creation of signal tracks, segmentation, annotation manipulations, etc.
[[
|200px|right]]
"Error: no local variable "counter" was set." is not a number.
Description
RSEQtools provides a set of programs to perform most RNASeq data analyses. It also includes a data format which is compact and allows anonymization of sequence information: Mapped Read Format (MRF). It provides several conversion tools into MRF from the most popular format for mapped reads.
Links
References
To add a reference for RSEQtools, enter the PubMed ID in the field below and click 'Add'.
Search for "RSEQtools" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
