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{{Bioinformatics application

|sw summary=MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. Basically it is a ultra-fast alignment of large-scale DNA and protein sequences

|bio method=Alignment

|created by=Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL

|created at=The Institute for Genomic Research, Maryland

|input format=FASTA,

|output format=delta

}}

[http://www.ncbi.nlm.nih.gov/pubmed/19389736 This paper] claims to be interface equivalent, and more memory efficient. See http://compbio.cs.princeton.edu/mems