VCAKE
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Application data |
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| Created by | William Jeck, Nassib Nassar, Josie Reinhardt |
|---|---|
| Biological application domain(s) | Sequence assembly (de novo assembly) |
| Principal bioinformatics method(s) | Sequence assembly, k-mer counting |
| Created at | University of Carolina-Chapel Hill |
| Maintained? | No |
| Input format(s) | FASTA |
| Output format(s) | FASTA |
| Programming language(s) | Perl, C |
| Licence | GPL |
| Operating system(s) | Linux, Mac OS X |
Summary: De novo assembly of short reads with robust error correction. An improvement on early versions of SSAKE.
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VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software was geared towards de novo assembly of Illumina's Solexa Sequencing data.
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