Difference between revisions of "Skewer"
m (Text replace - "([= ])Trimming," to "$1Sequence trimming,") |
|||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. | |sw summary=Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. | ||
− | |bio domain=Small RNA Sequencing, RNA-Seq, | + | |bio domain=Small RNA Sequencing, RNA-Seq, Sequence assembly |
− | |bio method=Read pre-processing, Adapter removal, Sequence trimming, | + | |bio method=Read pre-processing, Adapter removal, Sequence trimming, Read mapping, |
|bio tech=Illumina, Illumina HiSeq, Illumina Solexa, | |bio tech=Illumina, Illumina HiSeq, Illumina Solexa, | ||
|created by=Hongshan Jiang | |created by=Hongshan Jiang |
Latest revision as of 18:23, 2 December 2015
Application data |
|
Created by | Hongshan Jiang |
---|---|
Biological application domain(s) | Small RNA Sequencing, RNA-Seq, Sequence assembly |
Principal bioinformatics method(s) | Read pre-processing, Adapter removal, Sequence trimming, Read mapping |
Technology | Illumina, Illumina HiSeq, Illumina Solexa |
Created at | University of California Riverside, CA 92521, USA |
Maintained? | Yes |
Input format(s) | (Compressed) FASTQ, (Compressed) FASTA |
Output format(s) | Fasta/q, Fasta.gz, fastq.gz |
Software features | multi-threading |
Programming language(s) | C++ |
Operating system(s) | Linux 64 |
Contact: | hongshan.jiang@ucr.edu |
Summary: Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.
"Error: no local variable "counter" was set." is not a number.
Description
http://www.biomedcentral.com/1471-2105/15/182
Links
References
To add a reference for Skewer, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "Skewer" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|