Difference between revisions of "ANCHOR"
Line 3: | Line 3: | ||
|bio method=Sequence assembly, Sequence assembly validation, | |bio method=Sequence assembly, Sequence assembly validation, | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
− | |interface=Command line, | + | |interface=Command line, |
− | |resource type=Tool, | + | |resource type=Tool, |
|created at=Canada's Michael Smith Genome Sciences Centre, | |created at=Canada's Michael Smith Genome Sciences Centre, | ||
|maintained=Yes | |maintained=Yes | ||
+ | |email address=rdocking@bcgsc.ca | ||
|input format=FASTA, FASTQ, | |input format=FASTA, FASTQ, | ||
|output format=FASTA, BAM, | |output format=FASTA, BAM, |
Revision as of 17:42, 3 December 2015
Application data |
|
Principal bioinformatics method(s) | Sequence assembly, Sequence assembly validation |
---|---|
Technology | Illumina |
Created at | Canada's Michael Smith Genome Sciences Centre |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ |
Output format(s) | FASTA, BAM |
Programming language(s) | C++, Python |
Interface type(s) | Command line |
Resource type(s) | Tool"Tool" is not in the list (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, ...) of allowed values for the "Resource type" property. |
Software libraries | SAMtools, BWA, blat |
Licence | BCCA (academic use) |
Operating system(s) | Linux |
Contact: | rdocking@bcgsc.ca |
Summary: Post-processing tools for de novo assemblies
"Error: no local variable "counter" was set." is not a number.
Description
Anchor currently includes two main modules:
- Correction of erroneous single-nucleotide variants and small indels
- Scaffold-filling by local re-assembly
Links
References
none specified
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