Difference between revisions of "PE-Assembler"
(Created page with "{{Bioinformatics application |sw summary=A simple 3' extension approach to assembling paired-end reads and capable of parallelization |bio domain=De novo assembly }} == Descripti...") |
m (Text replace - "De-novo assembly" to "Sequence assembly (de novo assembly)") |
||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A simple 3' extension approach to assembling paired-end reads and capable of parallelization | |sw summary=A simple 3' extension approach to assembling paired-end reads and capable of parallelization | ||
| − | |bio domain= | + | |bio domain=Sequence assembly (de novo assembly) |
| + | |bio method=Scaffolding, | ||
| + | |maintained=Yes | ||
| + | |language=C++, | ||
}} | }} | ||
== Description == | == Description == | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | PE-Assembler implements a method that eschews the traditional graph based approach in favour of a simple 3’ extension approach that has potential to be massively parallelized. It is able to obtain assemblies that are more contiguous, complete and less error prone compared to existing methods. | |
Latest revision as of 17:09, 2 December 2015
|
Application data |
|
| Biological application domain(s) | Sequence assembly (de novo assembly) |
|---|---|
| Principal bioinformatics method(s) | Scaffolding |
| Maintained? | Yes |
| Programming language(s) | C++ |
Summary: A simple 3' extension approach to assembling paired-end reads and capable of parallelization
"Error: no local variable "counter" was set." is not a number.
Description
PE-Assembler implements a method that eschews the traditional graph based approach in favour of a simple 3’ extension approach that has potential to be massively parallelized. It is able to obtain assemblies that are more contiguous, complete and less error prone compared to existing methods.
Links
References
To add a reference for PE-Assembler, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "PE-Assembler" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
