RSEQtools
Application data |
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Created by | Lukas Habegger, Andrea Sboner |
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Biological application domain(s) | RNA-Seq quantification |
Created at | Yale University |
Maintained? | Yes |
Input format(s) | Bowtie, PSL, SAM, Illumina export files |
Output format(s) | MRF, SAM, BED, WIG, BEDGRAPH, GFF, etc. |
Programming language(s) | C |
Licence | Creative Commons - Attribution; Non-commercial 2.5 |
Operating system(s) | Mac OS X, UNIX, Linux |
Summary:
RSEQtools includes a format specification for RNA-Seq data that provides confidentially-aware; data summaries as well as several tools for performing common analyses: expression measurements (e.g. RPKMs), creation of signal tracks, segmentation, annotation manipulations, etc.
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Description
RSEQtools provides a set of programs to perform most RNASeq data analyses. It also includes a data format which is compact and allows anonymization of sequence information: Mapped Read Format (MRF). It provides several conversion tools into MRF from the most popular format for mapped reads.
Links
References
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