Omixon Variant Toolkit
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Application data |
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| Biological application domain(s) | Comparative genomics, Sequence analysis, Mapping, Indel detection, SNP detection |
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| Principal bioinformatics method(s) | Sequence alignment, Sequence assembly, Read mapping |
| Technology | Illumina, Ion Torrent, ABI SOLiD, 454 |
| Created at | Omixon |
| Maintained? | Yes |
| Input format(s) | FASTQ, CSFASTA, SAM, most others |
| Output format(s) | SAM, VCF, GFF |
| Software features | easy to use parameters, full documentation, also a plugin available in CLCbio and Geneious |
| Licence | Commercial, Freeware |
| Operating system(s) | interoperable |
Summary: Omixon Target Standard, Target HLA and Target Pro are designed to help clinical, diagnostic and research labs to efficiently get the maximum accuracy and precision from their targeted NGS data.
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Omixon combines high precision and sensitivity for SNP, insertion, and deletion detection. Omixon Target offers platform specific algorithms for Illumina, Roche 454 and Ion Torrent and runs on Linux, Windows, and Mac.
Links
Links
- Omixon Variant Toolkit Homepage [ edit link ]
- Omixon Variant Toolkit Homepage [ edit link ]
- Omixon Variant Toolkit Description [ edit link ]
- Omixon Variant Toolkit [ edit link ]
References
- . 2011. Journal of Bacteriology
- . 2012. Journal of Bacteriology
- . 2012. Journal of Bacteriology
- . 2012. Journal of Bacteriology
To add a reference for Omixon Variant Toolkit, enter the PubMed ID in the field below and click 'Add'.
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