Sequence motifs

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The bioinformatics applications assigned the Biological domain Sequence motifs ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 6 results.

	Biological domain	Bioinformatics method	Input format	Output format
ChIPMunk	ChIP-seq Sequence motifs	Sequence motif comparison Sequence motif discovery	Multi-fasta Extended multi-fasta	Plain text
CisGenome	ChIP-seq ChIP-on-chip Sequence motifs	Sequence motif recognition Gibbs sampling Integrated solution Data retrieval
MICSA	ChIP-seq Sequence motifs	Sequence motif comparison
MochiView	Genomics ChIP-seq RNA-Seq ChIP-on-chip Sequence motifs	Genome visualisation Sequence motif comparison	FASTA GFF BED WIG Custom MEME Bioprospector Custom Motif format	Varied
MotifLab	ChIP-seq Sequence motifs Transcription factors and regulatory sites Sequence analysis Gene regulation	Visualisation Peak calling Genome visualisation Sequence contamination filtering Sequence motif discovery Format conversion	FASTA GFF BED WIG CSV Delimited Text Others GTF Custom MEME Bioprospector Custom Motif format BedGraph Plain text BigWig Excel 2bit BigBed JASPAR XMS TRANSFAC	FASTA GFF BED WIG CSV Delimited Text HTML Others GTF Custom MEME Bioprospector Custom Motif format BedGraph Plain text Excel JASPAR XMS TRANSFAC
SSA	Sequence motifs	Sequence analysis Sequence motif comparison Sequence motif discovery	FASTA FPS	FASTA FPS