Sequence motif discovery

Query returned 6 results.

	Biological domain	Bioinformatics method	Input format	Output format
ChIPMunk	ChIP-seq Sequence motifs	Sequence motif comparison Sequence motif discovery	Multi-fasta Extended multi-fasta	Plain text
GEM	ChIP-seq	Peak calling Sequence motif discovery	SAM BAM ELAND BED Bowtie
Geneious	Sequence assembly (de novo assembly) Genomics RNA-Seq Metagenomics Epigenomics Structural variation Sequence analysis Phylogenetics Population genetics	Sequence assembly Read mapping Sequence alignment Visualisation Annotation Sequence assembly validation Genome visualisation Variant calling DNA barcoding Sequence motif discovery	FASTA FASTQ SAM ELAND GenBank CSFASTA CSQUAL
MotifLab	ChIP-seq Sequence motifs Transcription factors and regulatory sites Sequence analysis Gene regulation	Visualisation Peak calling Genome visualisation Sequence contamination filtering Sequence motif discovery Format conversion	FASTA GFF BED WIG CSV Delimited Text Others GTF Custom MEME Bioprospector Custom Motif format BedGraph Plain text BigWig Excel 2bit BigBed JASPAR XMS TRANSFAC	FASTA GFF BED WIG CSV Delimited Text HTML Others GTF Custom MEME Bioprospector Custom Motif format BedGraph Plain text Excel JASPAR XMS TRANSFAC
RSAT peak-motifs	ChIP-seq Epigenomics Gene regulation	Sequence motif recognition Sequence motif comparison Sequence motif discovery	Fasta	HTML Text Graphics (png)
SSA	Sequence motifs	Sequence analysis Sequence motif comparison Sequence motif discovery	FASTA FPS	FASTA FPS