Browse data: Bioinformatics application

C (2) · C++ (2) · Java (4) · Java 7 (1) · Perl (1) · Python (1) · R (5)

*NIX · 10 · 10.8 · 8 · AIX · All · Amazon EC2 · Compaq Alpha · Cross-Platform · GNU/Linux · IRIX · Linux · Linux 64 · Linux CentOS 6.5 · Linux Ubuntu 12.04 · Mac · Mac OS X · Mac OS X 10.7 · Mac OS X; x86 64 · Mac OS X; x86 64 · OS X · OSX · OpenBSD · POSIX · Requires Tomcat server · Solaris · UNIX · Unix · Unix-like · Web · Windows · Windows (Cygwin) · Windows 7 64-bit or Higher · Windows 7 or Higher · Windows XP · all supporting JVM · any · browser based · cloud · cross-platform · iOS · interoperable · or 10.9 · or 10.9 with Parallels Desktop · platform-independent · tested for Linux (Ubuntu) · Other · None

Yes (18)

Artistic-2.0 (1) · BSD (1) · Commercial (9) · Freeware (1) · GPL (1) · GPL-2 + file LICENSE (2) · GPLv3 (2) · free for non-commercial academic research (1)

454 · ABI SOLiD · Affymetrix · Agilent · All · Any · Any HTS · Any sequencing platform · Anything that can be assembled with Celera or Newbler · Complete Genomics · GenePix · Helicos · Illumina · Illumina HiSeq · Illumina HiSeq X Ten · Illumina HiSeq/NextSeq/MiSeq/Solexa · Illumina Solexa · Ion Torrent · Ion proton · MiSeq · NGS · PacBio · Pacific Biosciences · Pyrosequencing (QIAGEN) · Roche · Roche 454 · Roche NimbleGen · SOLiD · Sanger · all · Other · None

; Ab-initio gene prediction Adapter removal Analysis Annotation Biological interpretation Bisulfite mapping Collapsing methods Differential Binding Differential expression analysis Gene expression analysis Genome visualisation Heat map generation K-mer counting Metabolic network modelling Mutation detection Nucleic acid sequence feature detection Pathway or network analysis Peak calling Quality control RNA-Seq analysis Read alignment Read depth analysis Read mapping Read pre-processing SNP annotation SNP calling SNP detection Sequence alignment Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence assembly visualisation Sequence contamination filtering Sequence functional annotation Sequence trimming Sequencing quality control Species frequency estimation Statistical calculation Translated nucleotide search Variant calling Variant classification Variant prioritisation Visualisation

; Alternative splicing ChIP-exo ChIP-seq Comparative genomics Copy number estimation DNA-Seq DNase-seq Data handling Epigenomics Exome analysis Exome and whole genome variant detection Exome capture Functional genomics Gene expression Gene structure Genetics Genome Wide Association Studies Genomics Indel detection Mapping MeDIP-Seq Metabolic pathways Metagenomics Methyl-Seq Microbial Surveillance Next Generation Sequencing Pathway or network analysis Phylogenetics Quality control RNA RNA-Seq RNA-Seq alignment Read binning Regulatory RNA Resequencing SNP SNP detection Sequence alignment Sequence analysis Sequence assembly (de novo assembly) Sequencing Small RNA-Seq Transcription factors and regulatory sites Transcriptomics Whole genome resequencing