Difference between revisions of "Tablet"
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|sw summary=Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. | |sw summary=Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. | ||
|bio domain=Genomics, Genotyping, Comparative genomics | |bio domain=Genomics, Genotyping, Comparative genomics | ||
− | |bio method=Sequence assembly | + | |bio method=Sequence assembly visualisation |
|bio tech=Illumina, 454, Sanger | |bio tech=Illumina, 454, Sanger | ||
|created by=Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D | |created by=Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D | ||
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|maintained=Yes | |maintained=Yes | ||
|input format=MAQ, ACE, AFG, SAM, BAM, SOAP, FASTQ, FASTA, GFF3, VCF, GTF | |input format=MAQ, ACE, AFG, SAM, BAM, SOAP, FASTQ, FASTA, GFF3, VCF, GTF | ||
− | |output format=PNG, | + | |output format=PNG, |
|sw feature=Sequence assembly visualisation | |sw feature=Sequence assembly visualisation | ||
|language=Java | |language=Java |
Revision as of 14:01, 2 December 2015
Application data |
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Created by | Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D |
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Biological application domain(s) | Genomics, Genotyping, Comparative genomics |
Principal bioinformatics method(s) | Sequence assembly visualisation |
Technology | Illumina, 454, Sanger |
Created at | Information and Computational Sciences, The James Hutton Institute, Dundee, UK |
Maintained? | Yes |
Input format(s) | MAQ, ACE, AFG, SAM, BAM, SOAP, FASTQ, FASTA, GFF3, VCF, GTF |
Output format(s) | PNG |
Software features | Sequence assembly visualisation |
Programming language(s) | Java |
Licence | BSD |
Operating system(s) | Windows, OS X, Linux |
Summary: Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
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Description
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory-efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine.
Tablet is freely available for Microsoft Windows, OS X, and Linux. Fully bundled installers can be downloaded from http://ics.hutton.ac.uk/tablet in 32 and 64-bit versions. Example screenshots are available at http://ics.hutton.ac.uk/tablet/tablet-screenshots.
Links
References
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