Difference between revisions of "Sequencher"
m (Text replace - "De-novo assembly" to "Sequence assembly (de novo assembly)") |
m (Text replace - "Alignment" to "Sequence alignment") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Desktop alignment software now with plugins to MAQ and GSNAP for NGS sequence date | |sw summary=Desktop alignment software now with plugins to MAQ and GSNAP for NGS sequence date | ||
| − | |bio domain=Sequence assembly (de novo assembly), SNP | + | |bio domain=Sequence assembly (de novo assembly), SNP detection |
| − | |bio method=Sequence assembly, | + | |bio method=Sequence assembly, Sequence alignment |
|bio tech=454, Illumina, ABI SOLiD, Ion Torrent, Sanger | |bio tech=454, Illumina, ABI SOLiD, Ion Torrent, Sanger | ||
|created by=Genecodes | |created by=Genecodes | ||
Latest revision as of 16:11, 19 December 2015
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Application data |
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| Created by | Genecodes |
|---|---|
| Biological application domain(s) | Sequence assembly (de novo assembly), SNP detection |
| Principal bioinformatics method(s) | Sequence assembly, Sequence alignment |
| Technology | 454, Illumina, ABI SOLiD, Ion Torrent, Sanger |
| Maintained? | Yes |
| Input format(s) | FASTQ, FASTA |
| Output format(s) | proprietary |
| Software features | Bisulfite sequencing, consensus sequence generation and export, SNP/InDel/Read Error display and search |
| Licence | Commercial |
| Operating system(s) | Windows, Mac OS X |
Summary: Desktop alignment software now with plugins to MAQ and GSNAP for NGS sequence date
"Error: no local variable "counter" was set." is not a number.
Description
Sequencher 5.0 has been updated to deal with NGS data. It now uses Tablet, MAQ, and GSNAP as plugins to deal with NGS data. Requires cygwin libraries on Windows in order to run plugins.
Links
References
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