Functional genomics

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The bioinformatics applications assigned the Biological domain Functional genomics ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 5 results.

	Biological domain	Bioinformatics method	Input format	Output format
ERGO Genome Analysis and Discovery System	Transcriptomics Metagenomics Transcription factors and regulatory sites Phylogenetics Comparative genomics SNP Functional genomics Gene structure Exome analysis Genome Wide Association Studies Metabolic pathways	Sequence alignment SNP detection SNP annotation Gene expression analysis Pathway or network analysis Sequence annotation Sequence functional annotation Metabolic network modelling
Galaxy	Sequence assembly Whole genome resequencing Genomics Comparative genomics Functional genomics	Sequence assembly Sequence alignment Visualisation Sequencing quality control
Partek Genomics Suite	Transcriptomics ChIP-seq SNP detection RNA-Seq quantification DNA transcription Epigenomics Alternative splicing Functional genomics
PeakAnalyzer	ChIP-seq Functional genomics			BED GTF
SNPsea	SNP detection Functional genomics Gene expression analysis	Enrichment