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  • 10:29, 21 September 2009 (diff | hist) . . (+340)‎ . . N 19236709 ‎ (Created page with '{{Reference |reference describes=PEMer |pmid=19236709 |title=PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from ma…')
  • 10:28, 21 September 2009 (diff | hist) . . (+82)‎ . . N PEMer/URL 0 ‎ (Created page with '{{URL |url describes=PEMer |type=Homepage |url=http://sv.gersteinlab.org/pemer/ }}') (current)
  • 10:27, 21 September 2009 (diff | hist) . . (+676)‎ . . N PEMer ‎ (Created page with '{{Bioinformatics application |sw summary=The package is composed of three modules, PEMer workflow, SV-Simulation and BreakDB. PEMer workflow is a sensitive software for detecting…')
  • 10:23, 21 September 2009 (diff | hist) . . (+244)‎ . . N 18467344 ‎ (Created page with '{{Reference |reference describes=PatMaN |pmid=18467344 |title=PatMaN: rapid alignment of short sequences to large databases. |year=2008 |journal=Bioinformatics |author=Prüfer K,…') (current)
  • 10:21, 21 September 2009 (diff | hist) . . (+83)‎ . . N PatMaN/URL 0 ‎ (Created page with '{{URL |url describes=PatMaN |type=Homepage |url=http://bioinf.eva.mpg.de/patman/ }}') (current)
  • 10:21, 21 September 2009 (diff | hist) . . (+293)‎ . . N PatMaN ‎ (Created page with '{{Bioinformatics application |sw summary=Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small…')
  • 10:19, 21 September 2009 (diff | hist) . . (+215)‎ . . N 17537755 ‎ (Created page with '{{Reference |reference describes=PALMA |pmid=17537755 |title=PALMA: mRNA to genome alignments using large margin algorithms |year=2007 |journal=Bioinformatics |author=Schulze U, …')
  • 10:17, 21 September 2009 (diff | hist) . . (+101)‎ . . N PALMA/URL 0 ‎ (Created page with '{{URL |url describes=PALMA |type=Homepage |url=http://www.fml.tuebingen.mpg.de/raetsch/suppl/palma }}') (current)
  • 10:17, 21 September 2009 (diff | hist) . . (+1,093)‎ . . N PALMA ‎ (Created page with '{{Bioinformatics application |sw summary=We present a novel approach based on large margin learning that combines accurate splice site predictions with common sequence alignment …')
  • 10:13, 21 September 2009 (diff | hist) . . (+109)‎ . . N SimNext/URL 0 ‎ (Created page with '{{URL |url describes=SimNext |type=Homepage |url=http://evolution.sysu.edu.cn/english/software/simnext.htm }}') (current)
  • 10:12, 21 September 2009 (diff | hist) . . (+421)‎ . . N SimNext ‎ (Created page with '{{Bioinformatics application |sw summary=New algorithms and software are required to process and analyse the data produced by new sequencing technologies. Sequencing simulators …')
  • 10:10, 21 September 2009 (diff | hist) . . (+109)‎ . . N MapNext/URL 1 ‎ (Created page with '{{URL |url describes=MapNext |type=Homepage |url=http://evolution.sysu.edu.cn/english/software/mapnext.htm }}') (current)
  • 10:09, 21 September 2009 (diff | hist) . . (+106)‎ . . N MapNext/URL 0 ‎ (Created page with '{{URL |url describes=MapNext |type=Manual |url=http://evolution.sysu.edu.cn/software/manual_mapnext.pdf }}') (current)
  • 10:09, 21 September 2009 (diff | hist) . . (+454)‎ . . N MapNext ‎ (Created page with '{{Bioinformatics application |sw summary=MapNext provides four mainly analysis: (i) unspliced alignment and clustering of reads, (ii) spliced alignment of transcriptomic reads, (…')
  • 10:08, 21 September 2009 (diff | hist) . . (+89)‎ . . N MapView/URL 0 ‎ (Created page with '{{URL |url describes=MapView |type=Homepage |url=http://evolution.sysu.edu.cn/mapview/ }}') (current)
  • 10:07, 21 September 2009 (diff | hist) . . (+230)‎ . . N 19369497 ‎ (Created page with '{{Reference |reference describes=MapView |pmid=19369497 |title=MapView: visualization of short reads alignment on a desktop computer. |year=2009 |journal=Bioinformatics |author=B…') (current)
  • 09:57, 21 September 2009 (diff | hist) . . (+96)‎ . . N BEAP/URL 0 ‎ (Created page with '{{URL |url describes=BEAP |type=Homepage |url=http://www.animalgenome.org/bioinfo/tools/beap/ }}') (current)
  • 09:56, 21 September 2009 (diff | hist) . . (+296)‎ . . N 19159488 ‎ (Created page with '{{Reference |reference describes=BEAP |pmid=19159488 |title=BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome seq…')
  • 09:55, 21 September 2009 (diff | hist) . . (+767)‎ . . N BEAP ‎ (Created page with '{{Bioinformatics application |sw summary=The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gen…')
  • 09:52, 21 September 2009 (diff | hist) . . (+23)‎ . . ABBA ‎
  • 09:51, 21 September 2009 (diff | hist) . . (+265)‎ . . N 18818729 ‎ (Created page with '{{Reference |reference describes=ABBA |pmid=18818729 |title=Gene-boosted assembly of a novel bacterial genome from very short reads. |year=2008 |journal=PLOS Computational Biolog…')
  • 09:49, 21 September 2009 (diff | hist) . . (+264)‎ . . N ABBA ‎ (Created page with '{{Bioinformatics application |sw summary=Assembly Boosted By Amino acid sequence is a comparative gene assembler, which uses amino acid sequences from predicted proteins to help …')
  • 09:46, 21 September 2009 (diff | hist) . . (+84)‎ . . N Reconciliator/URL 0 ‎ (Created page with '{{URL |url describes=Reconciliator |type=Homepage |url=http://www.genome.umd.edu/ }}') (current)
  • 09:46, 21 September 2009 (diff | hist) . . (+214)‎ . . N 18057021 ‎ (Created page with '{{Reference |reference describes=Reconciliator |pmid=18057021 |title=Assembly reconciliation |year=2008 |journal=Bioinformatics |author=Aleksey V. Zimin, Douglas R. Smith, Grange…') (current)
  • 09:44, 21 September 2009 (diff | hist) . . (+164)‎ . . N Reconciliator ‎ (Created page with '{{Bioinformatics application |sw summary=The tool for merging assemblies |bio method=Assembly, |created at=University of Maryland, |language=Perl, |os=Linux, }}')
  • 10:35, 2 September 2009 (diff | hist) . . (+1)‎ . . ClustDB ‎
  • 10:35, 2 September 2009 (diff | hist) . . (-2)‎ . . ClustDB ‎
  • 10:34, 2 September 2009 (diff | hist) . . (+365)‎ . . ClustDB ‎
  • 10:33, 2 September 2009 (diff | hist) . . (+134)‎ . . N ClustDB/URL 0 ‎ (Created page with '{{URL |url describes=ClustDB |type=Homepage |url=http://www.charite.de/molbiol/bioinf/bioinf/Computerprogramme/ClustDB/clustdb.html }}') (current)
  • 10:32, 2 September 2009 (diff | hist) . . (+233)‎ . . N 17570866 ‎ (Created page with '{{Reference |reference describes=ClustDB |pmid=17570866 |title=Simultaneous identification of long similar substrings in large sets of sequences |year=2007 |journal=BMC Bioinform…') (current)
  • 10:31, 2 September 2009 (diff | hist) . . (+80)‎ . . N ClustDB ‎ (Created page with '{{Bioinformatics application |input format=FASTA, GenBank, EMBL, |os=Linux, }}')
  • 10:27, 2 September 2009 (diff | hist) . . (+103)‎ . . N CASHX/URL 0 ‎ (Created page with '{{URL |url describes=CASHX |type=Homepage |url=http://jcclab.science.oregonstate.edu/node/view/56095 }}') (current)
  • 10:27, 2 September 2009 (diff | hist) . . (+333)‎ . . N 19307293 ‎ (Created page with '{{Reference |reference describes=CASHX |pmid=19307293 |title=Computational and analytical framework for small RNA profiling by high-throughput sequencing |year=2009 |journal=RNA…')
  • 10:26, 2 September 2009 (diff | hist) . . (+584)‎ . . N CASHX ‎ (Created page with '{{Bioinformatics application |sw summary=The Cache ASsisted Hash Search with Xor logic (CASHX) Pipeline can be used to parse, map, quantify and manage large quantities of short-r…')
  • 10:21, 2 September 2009 (diff | hist) . . (+250)‎ . . N 19261174 ‎ (Created page with '{{Reference |reference describes=BOWTIE |pmid=19261174 |title=Ultrafast and memory-efficient alignment of short DNA sequences to the human genome |year=2009 |journal=Genome Biolo…') (current)
  • 10:19, 2 September 2009 (diff | hist) . . (+96)‎ . . N Bowtie/URL 0 ‎ (Created page with '{{URL |url describes=BOWTIE |type=Homepage |url=http://bowtie-bio.sourceforge.net/index.shtml }}')
  • 10:19, 2 September 2009 (diff | hist) . . (+81)‎ . . Bowtie ‎
  • 10:06, 19 August 2009 (diff | hist) . . (+1,657)‎ . . N 18952627 ‎ (Created page with '{{Reference |reference describes=CABOG |pmid=18952627 |title=Aggressive Assembly of Pyrosequencing Reads with Mates. |year=2008 |journal=Bioinformatics |author=Miller JR, Delcher…')
  • 10:04, 19 August 2009 (diff | hist) . . (+42)‎ . . CABOG ‎
  • 10:03, 19 August 2009 (diff | hist) . . (+87)‎ . . N CABOG/URL 0 ‎ (Created page with '{{URL |url describes=CABOG |type=Homepage |url=http://wgs-assembler.sourceforge.net/ }}') (current)
  • 10:02, 19 August 2009 (diff | hist) . . (+1,563)‎ . . N 18340039 ‎ (Created page with '{{Reference |reference describes=ALLPATHS |pmid=18340039 |title=ALLPATHS: de novo assembly of whole-genome shotgun microreads. |year=2008 |journal=Genome Research |author=Butler …') (current)
  • 10:00, 19 August 2009 (diff | hist) . . (+165)‎ . . N ALLPATHS/URL 0 ‎ (Created page with '{{URL |url describes=ALLPATHS |type=Homepage |url=http://www.broad.mit.edu/science/programs/genome-biology/computational-rd/computational-research-and-development }}') (current)
  • 09:58, 19 August 2009 (diff | hist) . . (-25)‎ . . ABySS ‎
  • 09:57, 19 August 2009 (diff | hist) . . (+96)‎ . . ABySS ‎
  • 09:54, 19 August 2009 (diff | hist) . . (+234)‎ . . N 19251739 ‎ (Created page with '{{Reference |reference describes=ABySS |pmid=19251739 |title=ABySS: A parallel assembler for short read sequence data |year=2009 |journal=Genome Research |author=Simpson JT, Wong…')
  • 09:52, 19 August 2009 (diff | hist) . . (+101)‎ . . N ABySS/URL 0 ‎ (Created page with '{{URL |url describes=ABySS |type=Homepage |url=http://www.bcgsc.ca/platform/bioinfo/software/abyss }}') (current)
  • 09:50, 19 August 2009 (diff | hist) . . (+89)‎ . . N Novocraft/URL 0 ‎ (Created page with '{{URL |url describes=Novocraft |type=Homepage |url=http://www.novocraft.com/index.html }}') (current)
  • 13:24, 10 August 2009 (diff | hist) . . (+42)‎ . . m Velvet ‎
  • 13:22, 10 August 2009 (diff | hist) . . (+255)‎ . . MOSAIK ‎
  • 13:18, 10 August 2009 (diff | hist) . . (-2)‎ . . m MOSAIK ‎

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