Browse data: Bioinformatics application

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AGPL · Apache License 2.0 · Artistic License · Artistic-2.0 · BCCA (academic use) · BSD · BSD (3-clause) · BSD License · BioLicense · Biopython License (MIT/BSD style) · Boost · C++ · CeCILL · CeCILL-C license · Commercial · Creative Commons - Attribution-NonCommercial-ShareAlike · Creative Commons - Attribution; Non-commercial 2.5 · Creative Commons license (Attribution-NonCommerical). · Custom Licence · EU-GPL · Free for academic use; Commercial · Freemium · Freeware · GNU · GPL · GPL Boost · GPL (>= 3) · GPL 2.0+ · GPL >=2 · GPL-2 + file LICENSE · GPL-3 · GPLv2 · GPLv3 · LGPL · LGPL 2.1 · LGPLv3 · MIT · Mozilla Public License · Non-commercial · Open Source · Perl artistic licence · Unknown · free for non-commercial academic research · Other · None

454 · ABI SOLiD · Affymetrix · Agilent · All · Any · Any HTS · Any sequencing platform · Anything that can be assembled with Celera or Newbler · Complete Genomics · GenePix · Helicos · Illumina · Illumina HiSeq · Illumina HiSeq X Ten · Illumina HiSeq/NextSeq/MiSeq/Solexa · Illumina Solexa · Ion Torrent · Ion proton · MiSeq · NGS · PacBio · Pacific Biosciences · Pyrosequencing (QIAGEN) · Roche · Roche 454 · Roche NimbleGen · SOLiD · Sanger · all · Other · None

; Ab-initio gene prediction Adapter removal Analysis Annotation Biological interpretation Bisulfite mapping Classification Comparative genomics Differential Binding Differential expression analysis Gene expression analysis Genome indexing (Burrows-Wheeler) Genome visualisation Graph reduction Heat map generation Hidden Markov Model K-mer counting Learning algorithm Local sequence alignment Mapping Metabolic network modelling Mutation detection Nucleic acid sequence feature detection Pathway or network analysis Peak calling Peptide mass fingerprint Quality assessement Quality control RNA-Seq analysis RRNA filtering Read alignment Read depth analysis Read mapping Read pre-processing Read summarisation SNP annotation SNP calling SNP detection Sequence alignment Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence contamination filtering Sequence functional annotation Sequence trimming Sequencing quality control Species frequency estimation Statistical calculation Transcriptome assembly Translated nucleotide search Variant calling Variant prioritisation Visualisation Workflows

; Alternative splicing ChIP-exo ChIP-on-chip ChIP-seq Community analysis Comparative genomics DNA-Seq DNA packaging DNase-seq Data handling Epidemiology Epigenomics Exome Exome analysis Exome and whole genome variant detection Exome capture Functional genomics Gene expression Gene structure Genome Wide Association Studies Genomics Genotyping High-throughput sequencing Indel detection Mapping MeDIP-Seq Metabolic pathways Metagenomics Methyl-Seq Microbial Surveillance Next Generation Sequencing Pathway or network analysis Phylogenetics Population Genomics Public health and epidemiology Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification Rarefaction Read binning Regulatory RNA Resequencing SNP SNP detection Sequence alignment Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly (de novo assembly) Sequencing Small RNA-Seq Transcription factors and regulatory sites Transcriptome assembly Transcriptomics Whole genome resequencing Workflows