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  • 16:12, 3 September 2009 (diff | hist) . . (+71)‎ . . N MOM/URL 0 ‎ (Created page with '{{URL |url describes=MOM |type=Homepage |url=http://mom.csbc.vcu.edu }}') (current)
  • 16:12, 3 September 2009 (diff | hist) . . (+1,284)‎ . . N 19228804 ‎ (Created page with '{{Reference |reference describes=MOM |pmid=19228804 |title=MOM: maximum oligonucleotide mapping. |year=2009 |journal=Bioinformatics |author=Eaves HL, Gao Y. |vol=25 }} SUMMARY: C…') (current)
  • 16:11, 3 September 2009 (diff | hist) . . (+107)‎ . . N MOM ‎ (Created page with '{{Bioinformatics application |sw summary=Short-read mapping |bio domain=genomics, |bio method=Mapping, }}')
  • 16:10, 3 September 2009 (diff | hist) . . (+86)‎ . . N ISSAKE/URL 0 ‎ (Created page with '{{URL |url describes=ISSAKE |type=Homepage }} ftp://ftp.bcgsc.ca/supplementary/iSSAKE.')
  • 16:10, 3 September 2009 (diff | hist) . . (+1,873)‎ . . N 19136549 ‎ (Created page with '{{Reference |reference describes=ISSAKE |pmid=19136549 |title=Profiling model T-cell metagenomes with short reads. |year=2009 |journal=Bioinformatics |author=Warren RL, Nelson BH…') (current)
  • 16:09, 3 September 2009 (diff | hist) . . (+97)‎ . . N ISSAKE ‎ (Created page with '{{Bioinformatics application |sw summary=T-cell metagenomics software |bio domain=metagenomics }}')
  • 16:08, 3 September 2009 (diff | hist) . . (+80)‎ . . N HI/URL 0 ‎ (Created page with '{{URL |url describes=HI |type=Homepage |url=ftp://ftp.sanger.ac.uk/pub/zn1/HI }}') (current)
  • 16:08, 3 September 2009 (diff | hist) . . (+22)‎ . . HI ‎
  • 16:08, 3 September 2009 (diff | hist) . . (+574)‎ . . N 19570807 ‎ (Created page with '{{Reference |reference describes=HI |pmid=19570807 |title=HI: haplotype improver using paired-end short reads. |year=2009 |journal=Bioinformatics |author=Long Q, MacArthur D, Nin…') (current)
  • 16:07, 3 September 2009 (diff | hist) . . (+117)‎ . . N HI ‎ (Created page with '{{Bioinformatics application |sw summary=Program for haplotype reconstruction |bio method=Haplotype reconstruction }}')
  • 16:06, 3 September 2009 (diff | hist) . . (+1,126)‎ . . N 19679872 ‎ (Created page with '{{Reference |reference describes=LookSeq |pmid=19679872 |title=LookSeq: a browser-based viewer for deep sequencing data. |year=2009 |journal=Genome Research |author=Manske HM, Kw…') (current)
  • 16:05, 3 September 2009 (diff | hist) . . (+82)‎ . . N LookSeq/URL 0 ‎ (Created page with '{{URL |url describes=LookSeq |type=Homepage |url=http://lookseq.sourceforge.net }}') (current)
  • 16:05, 3 September 2009 (diff | hist) . . (+122)‎ . . N LookSeq ‎ (Created page with '{{Bioinformatics application |sw summary=AJAX-based browser for deep sequencing data |bio method=Assembly visualization }}')
  • 16:03, 3 September 2009 (diff | hist) . . (+1,638)‎ . . N 19208115 ‎ (Created page with '{{Reference |reference describes=SHORTY |pmid=19208115 |title=Crystallizing short-read assemblies around seeds. |year=2009 |journal=Bioinformatics |author=Hossain MS, Azimi N, Sk…') (current)
  • 16:01, 3 September 2009 (diff | hist) . . (+1,876)‎ . . N 18689821 ‎ (Created page with '{{Reference |reference describes=Qpalma |pmid=1868982 |title=Optimal spliced alignments of short sequence reads. |year=2008 |journal=Bioinformatics |author=De Bona F, Ossowski S,…')
  • 15:55, 3 September 2009 (diff | hist) . . (+940)‎ . . N 19561018 ‎ (Created page with '{{Reference |reference describes=Pindel |pmid=19561018 |title=Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-…') (current)
  • 15:54, 3 September 2009 (diff | hist) . . (+40)‎ . . Pindel ‎
  • 21:57, 2 September 2009 (diff | hist) . . (+84)‎ . . N SAMtools/URL 0 ‎ (Created page with '{{URL |url describes=SAMtools |type=Homepage |url=http://samtools.sourceforge.net }}') (current)
  • 21:57, 2 September 2009 (diff | hist) . . (+1,612)‎ . . N 19505943 ‎ (Created page with '{{Reference |reference describes=SAMtools |pmid=19505943 |title=The Sequence Alignment/Map format and SAMtools. |year=2009 |journal=Bioinformatics |author=SUMMARY: The Sequence A…')
  • 21:55, 2 September 2009 (diff | hist) . . (+253)‎ . . N SAMtools ‎ (Created page with '{{Bioinformatics application |sw summary=SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment vi…')
  • 21:41, 2 September 2009 (diff | hist) . . (+5)‎ . . BreakDancer ‎
  • 21:41, 2 September 2009 (diff | hist) . . (+40)‎ . . MoDIL ‎
  • 21:40, 2 September 2009 (diff | hist) . . (+1,731)‎ . . N 19447966 ‎ (Created page with '{{Reference |reference describes=VariationHunter |pmid=19447966 |title=Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. |year=20…') (current)
  • 21:39, 2 September 2009 (diff | hist) . . (+98)‎ . . N VariationHunter/URL 0 ‎ (Created page with '{{URL |url describes=VariationHunter |type=Source code |url=http://compbio.cs.sfu.ca/strvar.htm }}') (current)
  • 21:38, 2 September 2009 (diff | hist) . . (+129)‎ . . N VariationHunter ‎ (Created page with '{{Bioinformatics application |sw summary=Detection of structural rearrangements |bio method=mapping, structural rearrangements }}')
  • 21:30, 2 September 2009 (diff | hist) . . (+106)‎ . . N MuMRescueLite/URL 0 ‎ (Created page with '{{URL |url describes=MuMRescueLite |type=Homepage |url=http://genome.gsc.riken.jp/osc/english/software/ }}') (current)
  • 21:29, 2 September 2009 (diff | hist) . . (+955)‎ . . N 19605420 ‎ (Created page with '{{Reference |reference describes=MuMRescueLite |pmid=19605420 |title=Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. |y…') (current)
  • 21:29, 2 September 2009 (diff | hist) . . (+168)‎ . . N MuMRescueLite ‎ (Created page with '{{Bioinformatics application |sw summary=Probabilistically reincorporates multi-mapping tags into mapped short read data. |bio domain=genomics, |bio method=mapping }}')
  • 21:26, 2 September 2009 (diff | hist) . . (+62)‎ . . Rolexa ‎
  • 21:24, 2 September 2009 (diff | hist) . . (+79)‎ . . N Ibis/URL 0 ‎ (Created page with '{{URL |url describes=Ibis |type=Homepage |url=http://bioinf.eva.mpg.de/Ibis/ }}') (current)
  • 21:24, 2 September 2009 (diff | hist) . . (+381)‎ . . N Ibis ‎ (Created page with '{{Bioinformatics application |sw summary=Ibis (Improved base identification system), is an accurate, fast and easy-to-use base caller for the Illumina sequencing system, which si…')
  • 21:22, 2 September 2009 (diff | hist) . . (+1,494)‎ . . N 19661376 ‎ (Created page with '{{Reference |reference describes=BayesCall |pmid=19661376 |title=BayesCall: A model-based basecalling algorithm for high-throughput short-read sequencing. |year=2009 |journal=Gen…')
  • 21:22, 2 September 2009 (diff | hist) . . (+77)‎ . . N BayesCall ‎ (Created page with '{{Bioinformatics application |bio domain=Sequencing |bio method=Basecaller }}')
  • 21:20, 2 September 2009 (diff | hist) . . (+79)‎ . . N PerM/URL 0 ‎ (Created page with '{{URL |url describes=PerM |type=Homepage |url=http://code.google.com/p/perm/ }}') (current)
  • 21:20, 2 September 2009 (diff | hist) . . (+1,444)‎ . . N 19675096 ‎ (Created page with '{{Reference |reference describes=PerM |pmid=19675096 |title=PerM: Efficient Mapping of Short Sequencing Reads with Periodic Full Sensitive Spaced Seeds. |year=2009 |journal=Bioin…') (current)
  • 21:19, 2 September 2009 (diff | hist) . . (+256)‎ . . N PerM ‎ (Created page with '{{Bioinformatics application |sw summary=PerM (Periodic Seed Mapping) uses periodic spaced seeds to significantly improve mapping efficiency for large reference genomes when comp…')
  • 21:12, 2 September 2009 (diff | hist) . . (+116)‎ . . N MicroRazerS/URL 0 ‎ (Created page with '{{URL |url describes=MicroRazerS |type=Homepage |url=http://www.seqan.de/web/show/Projects/(006)+MicroRazerS.html }}')
  • 21:12, 2 September 2009 (diff | hist) . . (+123)‎ . . N MicroRazerS ‎ (Created page with '{{Bioinformatics application |sw summary=MicroRazerS is a tool optimized for mapping short RNAs onto a reference genome. }}')
  • 21:09, 2 September 2009 (diff | hist) . . (+106)‎ . . N RazerS/URL 0 ‎ (Created page with '{{URL |url describes=RazerS |type=Homepage |url=http://www.seqan.de/web/show/Projects/(004)+RazerS.html }}')
  • 21:08, 2 September 2009 (diff | hist) . . (+1,025)‎ . . N 19592482 ‎ (Created page with '{{Reference |reference describes=RazerS |pmid=19592482 |title=RazerS--fast read mapping with sensitivity control. |year=2009 |journal=Genome Research |author=Weese D, Emde AK, Ra…') (current)
  • 21:07, 2 September 2009 (diff | hist) . . (+296)‎ . . N RazerS ‎ (Created page with '{{Bioinformatics application |sw summary=It allows the user to align sequencing reads of arbitrary length using either the Hamming distance or the edit distance. Our tool can wor…')
  • 20:18, 1 September 2009 (diff | hist) . . (+81)‎ . . N Mrfast/URL 0 ‎ (Created page with '{{URL |url describes=Mrfast |type=Homepage |url=http://mrfast.sourceforge.net/ }}') (current)
  • 20:17, 1 September 2009 (diff | hist) . . (+1,288)‎ . . N 19718026 ‎ (Created page with '{{Reference |reference describes=Mrfast |pmid=19718026 |title=Personalized copy number and segmental duplication maps using next-generation sequencing. |year=2009 |journal=Nature…')
  • 20:16, 1 September 2009 (diff | hist) . . (+121)‎ . . N MrFAST ‎ (Created page with '{{Bioinformatics application |sw summary=Determines copy number from short read sequencing data |bio domain=genomics, }}')
  • 20:15, 1 September 2009 (diff | hist) . . (+242)‎ . . N 19483690 ‎ (Created page with '{{Reference |reference describes=MoDIL |pmid=19483690 |title=MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions. |year=2009 |journal=Nature Me…') (current)
  • 20:14, 1 September 2009 (diff | hist) . . (+130)‎ . . N MoDIL ‎ (Created page with '{{Bioinformatics application |sw summary=Program to detect small indels in next generation sequencing data |bio domain=Genomics }}')
  • 20:13, 1 September 2009 (diff | hist) . . (+15)‎ . . BreakDancer ‎
  • 20:12, 1 September 2009 (diff | hist) . . (+1,363)‎ . . N 19668202 ‎ (Created page with '{{Reference |reference describes=BreakDancer |pmid=19668202 |title=BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. |year=2009 |journal=Natu…') (current)
  • 20:10, 1 September 2009 (diff | hist) . . (+210)‎ . . N BreakDancer ‎ (Created page with '{{Bioinformatics application |sw summary=BreakDancer is an application for detecting structural rearrangements and indels in short read sequencing data |bio domain=Genomics |bio …')
  • 20:07, 1 September 2009 (diff | hist) . . (+20)‎ . . TopHat ‎

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