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  • 17:45, 14 September 2011 (diff | hist) . . (+291)‎ . . N ChimeraScan ‎ (Created page with "{{Bioinformatics application |sw summary=Identifies chimaeric transcripts in RNA-Seq data |bio domain=Fusion transcripts, |created at=University of Michigan, }} == Description ...")
  • 17:43, 14 September 2011 (diff | hist) . . (+2,092)‎ . . N 21724593 ‎ (Created page with "{{Reference |reference describes=TOTALRECALLER |pmid=21724593 |title=TOTALRECALLER: improved accuracy and performance via integrated alignment and base-calling |year=2011 |journa...") (current)
  • 17:42, 14 September 2011 (diff | hist) . . (+121)‎ . . N TOTALRECALLER/URL 0 ‎ (Created page with "{{URL |url describes=TOTALRECALLER |type=Homepage |url=http://bioinformatics.nyu.edu/wordpress/projects/totalrecaller/ }}") (current)
  • 17:42, 14 September 2011 (diff | hist) . . (+1,216)‎ . . N 20190250 ‎ (Created page with "{{Reference |reference describes=Slider |pmid=20190250 |title=High quality SNP calling using Illumina data at shallow coverage. |year=2010 |journal=Bioinformatics |author=Malhis ...") (current)
  • 17:40, 14 September 2011 (diff | hist) . . (+267)‎ . . N TOTALRECALLER ‎ (Created page with "{{Bioinformatics application |sw summary=Improves sequence quality of reads and reduces ambiguous mappings |bio method=Basecaller, FPGA }} == Description == <!-- Describe the ap...")
  • 17:38, 14 September 2011 (diff | hist) . . (+84)‎ . . N ZINBA/URL 0 ‎ (Created page with "{{URL |url describes=ZINBA |type=Source code |url=http://code.google.com/p/zinba/ }}") (current)
  • 17:37, 14 September 2011 (diff | hist) . . (+913)‎ . . N 21787385 ‎ (Created page with "{{Reference |reference describes=ZINBA |pmid=21787385 |title=ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within a...") (current)
  • 17:36, 14 September 2011 (diff | hist) . . (+316)‎ . . N ZINBA ‎ (Created page with "{{Bioinformatics application |sw summary=Identifies genomic regions enriched in a variety of ChIP-seq and related next-generation sequencing experiments |bio domain=ChIP-Seq, DNA...")
  • 16:23, 14 September 2011 (diff | hist) . . (+19)‎ . . RApiD ‎
  • 16:22, 14 September 2011 (diff | hist) . . (+1,385)‎ . . N 21712251 ‎ (Created page with "{{Reference |reference describes=RApiD |pmid=21712251 |title=Paired-end RAD-seq for de novo assembly and marker design without available reference. |year=2011 |journal=Bioinforma...") (current)
  • 16:21, 14 September 2011 (diff | hist) . . (+109)‎ . . N RApiD/URL 0 ‎ (Created page with "{{URL |url describes=RApiD |type=Source code |url=http://guppy.weigelworld.org/weigeldatabases/radMarkers/ }}") (current)
  • 16:20, 14 September 2011 (diff | hist) . . (+773)‎ . . N RApiD ‎ (Created page with "{{Bioinformatics application |sw summary=Tools for processing restriction site associated DNA sequencing. }} == Description == <!-- Describe the application in the space below ...")
  • 16:16, 14 September 2011 (diff | hist) . . (+1,645)‎ . . N 21810900 ‎ (Created page with "{{Reference |reference describes=BBSeq |pmid=21810900 |title=A Powerful and Flexible Approach to the Analysis of RNA Sequence Count Data |year=2011 |journal=Bioinformatics |autho...") (current)
  • 16:14, 14 September 2011 (diff | hist) . . (+108)‎ . . N BBSeq/URL 0 ‎ (Created page with "{{URL |url describes=BBSeq |type=Source code |url=http://www.bios.unc.edu/research/genomic_software/BBSeq }}") (current)
  • 16:14, 14 September 2011 (diff | hist) . . (+696)‎ . . N BBSeq ‎ (Created page with "{{Bioinformatics application |sw summary=Tool for analyzing RNA-Seq data to analyze gene expression |bio domain=RNA-Seq Quantitation, |language=R }} == Description == <!-- Descr...")
  • 16:12, 14 September 2011 (diff | hist) . . (0)‎ . . MAQGene ‎
  • 16:11, 14 September 2011 (diff | hist) . . (0)‎ . . AMOS ‎
  • 16:10, 14 September 2011 (diff | hist) . . (+13)‎ . . Tracembler ‎
  • 16:08, 14 September 2011 (diff | hist) . . (-19)‎ . . Atlas-SNP2 ‎
  • 16:07, 14 September 2011 (diff | hist) . . (+2)‎ . . RNA ‎
  • 16:07, 14 September 2011 (diff | hist) . . (-1)‎ . . Integrated Genome Browser ‎
  • 16:07, 14 September 2011 (diff | hist) . . (-3)‎ . . SHE-RA ‎
  • 16:06, 14 September 2011 (diff | hist) . . (-4)‎ . . Genomedata ‎
  • 16:05, 14 September 2011 (diff | hist) . . (+1,569)‎ . . N 21803806 ‎ (Created page with "{{Reference |reference describes=GeeFu |pmid=21803806 |title=Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data. |year=20...") (current)
  • 16:04, 14 September 2011 (diff | hist) . . (+77)‎ . . N GeeFu/URL 0 ‎ (Created page with "{{URL |url describes=GeeFu |type=Source code |url=http://tinyurl.com/geefu }}") (current)
  • 16:03, 14 September 2011 (diff | hist) . . (+825)‎ . . N GeeFu ‎ (Created page with "{{Bioinformatics application |sw summary=Database tool for genomic assembly and feature data |bio domain=Genomics, |bio method=Assembly, |language=Ruby }} == Description == <!...")
  • 16:02, 14 September 2011 (diff | hist) . . (-25)‎ . . Sff2fastq ‎
  • 16:02, 14 September 2011 (diff | hist) . . (-1)‎ . . Zorro ‎
  • 16:02, 14 September 2011 (diff | hist) . . (-11)‎ . . Spiral Genetics ‎
  • 16:02, 14 September 2011 (diff | hist) . . (-20)‎ . . Genomatix Mining Station (GMS) ‎
  • 15:59, 14 September 2011 (diff | hist) . . (+855)‎ . . N 21803805 ‎ (Created page with "{{Reference |reference describes=ContEst |pmid=21803805 |title=ContEst: estimating cross-contamination of human samples in next-generation sequencing data |year=2011 |journal=Bi...") (current)
  • 15:57, 14 September 2011 (diff | hist) . . (+92)‎ . . ContEst ‎
  • 15:57, 14 September 2011 (diff | hist) . . (+117)‎ . . N ContEst/URL 0 ‎ (Created page with "{{URL |url describes=ContEst |type=Source code |url=https://confluence.broadinstitute.org/display/CGATools/ContEst }}") (current)
  • 15:55, 14 September 2011 (diff | hist) . . (+513)‎ . . N ContEst ‎ (Created page with "{{Bioinformatics application |sw summary=GATK tool to estimate amount of cross-individual contaminating sequence in a dataset |bio method=Sequencing Quality Control, |language=J...")
  • 15:52, 14 September 2011 (diff | hist) . . (+933)‎ . . N 21859476 ‎ (Created page with "{{Reference |reference describes=Cistrome |pmid=21859476 |title=Cistrome: an integrative platform for transcriptional regulation studies. |year=2011 |journal=Genome Biology |aut...") (current)
  • 15:51, 14 September 2011 (diff | hist) . . (+83)‎ . . N Cistrome/URL 0 ‎ (Created page with "{{URL |url describes=Cistrome |type=Analysis server |url=http://cistrome.org/ap/ }}") (current)
  • 15:51, 14 September 2011 (diff | hist) . . (+257)‎ . . N Cistrome ‎ (Created page with "{{Bioinformatics application |sw summary=Galaxy-based web service for analysis of ChIP data |bio domain=ChIP-Chip, ChIP-Seq, }} == Description == <!-- Describe the application ...")
  • 15:50, 14 September 2011 (diff | hist) . . (-6)‎ . . ChIPMunk ‎
  • 04:03, 14 September 2011 (diff | hist) . . (+744)‎ . . N 21873641 ‎ (Created page with "{{Reference |reference describes=KNIME |pmid=21873641 |title=Extending KNIME for Next Generation Sequencing data analysis. |year=2011 |journal=Bioinformatics |author=Jagla B, Wis...") (current)
  • 04:02, 14 September 2011 (diff | hist) . . (+110)‎ . . N KNIME/URL 0 ‎ (Created page with "{{URL |url describes=KNIME |type=Source code |url=http://tech.knime.org/community/next-generationsequencing }}")
  • 04:02, 14 September 2011 (diff | hist) . . (+241)‎ . . N KNIME ‎ (Created page with "{{Bioinformatics application |sw summary=Software for organizing bioinformatic workflows |bio method=Workflow }} == Description == <!-- Describe the application in the space bel...")
  • 04:00, 14 September 2011 (diff | hist) . . (+1,529)‎ . . N 20562417 ‎ (Created page with "{{Reference |reference describes=SOCS |pmid=20562417 |title=An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System |year=2010 |journal=Bioinfor...") (current)
  • 02:46, 14 September 2011 (diff | hist) . . (+1,762)‎ . . N 21858125 ‎ (Created page with "{{Reference |reference describes=LOCAS |pmid=21858125 |title=LOCAS - A Low Coverage Assembly Tool for Resequencing Projects. |year=2011 |journal=PLoS One |author=Klein JD, Ossows...") (current)
  • 02:44, 14 September 2011 (diff | hist) . . (+118)‎ . . Mauve ‎ (→‎Description)
  • 02:43, 14 September 2011 (diff | hist) . . (+13)‎ . . Mauve ‎
  • 02:43, 14 September 2011 (diff | hist) . . (+1,134)‎ . . N 21810901 ‎ (Created page with "{{Reference |reference describes=Mauve |pmid=21810901 |title=Mauve Assembly Metrics. |year=2011 |journal=Bioinformatics |author=Darling A, Tritt A, Eisen JA, Facciotti MT. }} SUM...") (current)
  • 02:40, 14 September 2011 (diff | hist) . . (+1,571)‎ . . N 21515631 ‎ (Created page with "{{Reference |reference describes=MiRanalyzer |pmid=21515631 |title=miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments |ye...") (current)
  • 21:11, 13 September 2011 (diff | hist) . . (+1,555)‎ . . N 21903629 ‎ (Created page with "{{Reference |reference describes=FLASH |pmid=21903629 |title=FLASH: Fast Length Adjustment of Short Reads to Improve Genome Assemblies. |year=2011 |journal=Bioinformatics |author...") (current)
  • 21:10, 13 September 2011 (diff | hist) . . (+91)‎ . . N FLASH/URL 0 ‎ (Created page with "{{URL |url describes=FLASH |type=Source code |url=http://www.cbcb.umd.edu/software/flash }}") (current)
  • 21:10, 13 September 2011 (diff | hist) . . (+309)‎ . . N FLASH ‎ (Created page with "{{Bioinformatics application |sw summary=Identifies paired-end reads which overlap in the middle, converting them to single long reads |bio method=Assembly, Read pre-processing ...")

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