Bisulfite mapping

Query returned 18 results.

	Biological domain	Bioinformatics method	Input format	Output format
Bis-SNP	DNA methylation SNP detection Sequencing Genotyping Epigenetics	Bisulfite mapping SNP calling Methylation calling	BAM	BED WIG VCF BEDGRAPH
Bismark	Genomics DNA methylation Epigenomics	Read mapping Bisulfite mapping Methylation calling	FASTA FASTQ	SAM (or custom)
Bison	DNA methylation Sequencing Epigenetics	Read mapping Bisulfite mapping Methylation calling	FASTQ (Compressed) FASTQ	BAM BEDGRAPH
BRAT	DNA methylation Epigenomics	Bisulfite mapping Mapping
BS Seeker	Epigenomics	Bisulfite mapping
BS-Seq	Epigenomics	Bisulfite mapping
BSMAP	DNA methylation	Read mapping Bisulfite mapping	FASTA FASTQ	SOAP mapping format
CLCbio Genomics Workbench	Sequence assembly (de novo assembly) Whole genome resequencing Genomics Transcriptomics ChIP-seq SNP detection Indel detection RNA-Seq Regulatory RNA Mapping	Sequence assembly Sequence assembly (de-novo assembly) Read mapping Sequence alignment Ab-initio gene prediction Adapter removal Annotation Bisulfite mapping SNP calling Heat map generation Sequence assembly validation	FASTA FASTQ SAM BAM CSFASTA/CSQUAL (ABI SOLiD) ELAND GenBank Illumina Bustard	FASTA FASTQ SAM BAM GFF GenBank ACE Nexus CSV PDF XLS
Epigenome	Epigenomics	Bisulfite mapping
ERNE	Sequence alignment Genomics DNA methylation Sequencing Epigenetics	Read mapping Bisulfite mapping	FASTQ (Compressed) FASTQ	SAM/BAM
Genedata Expressionist	Genomics Transcriptomics DNA methylation ChIP-seq SNP detection Indel detection RNA-Seq Sequencing Laboratory information management Copy number estimation Epigenetics Gene structure	Read mapping Sequence alignment Annotation Bisulfite mapping Clustering Genome visualisation Sequencing quality control Sequence analysis Statistical calculation Gene expression analysis RNA-Seq analysis	FASTA FASTQ QSEQ SAM BAM GFF BED VCF GTF BedGraph 2bit Nib GDC And many others.
GSNAP	DNA methylation RNA-Seq alignment	Read mapping Bisulfite mapping
Kismeth	DNA methylation Epigenomics	Bisulfite mapping
Methpipe	DNA methylation Sequencing Epigenetics	Bisulfite mapping	FASTQ SAM/BAM
MethylCoder	Genomics DNA methylation Epigenomics Sequencing	Read mapping Bisulfite mapping	FASTA FASTQ	SAM TXT Binary
PASH	DNA methylation Epigenomics	Sequence alignment Bisulfite mapping
RMAP	DNA methylation	Read mapping Bisulfite mapping
SOCS	DNA methylation RNA-Seq alignment SNP detection	Read mapping Bisulfite mapping	CSFASTA/CSQUAL (ABI SOLiD)	Delimited Text