Browse data: Bioinformatics application

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454 · ABI SOLiD · Affymetrix · Agilent · All · Any · Any HTS · Any sequencing platform · Anything that can be assembled with Celera or Newbler · Complete Genomics · GenePix · Helicos · Illumina · Illumina HiSeq · Illumina HiSeq X Ten · Illumina HiSeq/NextSeq/MiSeq/Solexa · Illumina Solexa · Ion Torrent · Ion proton · MiSeq · NGS · PacBio · Pacific Biosciences · Pyrosequencing (QIAGEN) · Roche · Roche 454 · Roche NimbleGen · SOLiD · Sanger · all · Other · None

; Ab-initio gene prediction Adapter removal Annotation Base-calling Bisulfite mapping Chromatogram visualisation Collapsing methods Comparative genomics Correlation DNA barcoding Differential expression analysis Exome analysis File reformatting Gene expression analysis Genome indexing Genome visualisation Graph reduction Heat map generation Hidden Markov Model K-mer counting Learning algorithm Local sequence alignment Mapping Metabolic network modelling Modelling and simulation Ontology comparison PCR primer design Pathway or network analysis Peak calling Quality control RNA-Seq analysis RRNA filtering Read mapping Read pre-processing SNP annotation SNP calling SNP detection Scaffolding Sequence alignment Sequence alignment analysis Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly editing Sequence assembly validation Sequence assembly visualisation Sequence contamination filtering Sequence error correction Sequence functional annotation Sequence motif discovery Sequence parsing Sequence trimming Sequencing quality control Statistical calculation Variant calling Variant classification Visualisation Workflows

; Alternative splicing ChIP-seq Clone verification Community analysis Comparative genomics Copy number estimation DNA-Seq DNA methylation DNA transcription Data handling Epidemiology Epigenomics Exome analysis Exome and whole genome variant detection Functional genomics Gene expression analysis Gene structure Genetic variation Genetics Genome Wide Association Studies Genomics Genotyping Indel detection Mapping Metabolic pathways Metabolic reconstruction Metagenomics Microbial Surveillance Next Generation Sequencing Personalised medicine Phylogenetics Population genetics Protein structure analysis Quality control RNA-Seq RNA-Seq alignment Rarefaction Read binning Regulatory RNA Regulatory genomics Resequencing SNP SNP detection Sequence alignment Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly (de novo assembly) Sequencing Structural variation Transcription factors and regulatory sites Transcriptome assembly Transcriptomics Whole genome resequencing Workflows